API Reference

Core API

Public Harmonizome client objects

Methods for the Harmonizome class

Harmonizome.get(): Returns a single entity or a list, depending on if a name is
Harmonizome.next(): Returns the next set of entities based on a previous API response.
Harmonizome.download(): For each dataset, creates a directory and downloads files into it.
Harmonizome.download_df()
Harmonizome.get_gene_functional_annotations(): Get functional annotations for a gene using the Harmonizome API.
Harmonizome.get_gene_with_associations(): Get gene information with associations using the API.
Harmonizome.download_gene_functional_annotations(): Download and get all functional annotations for a gene across specified datasets.
Harmonizome.get_gene_associations_summary(): Get a summary of all functional associations for a gene.
Harmonizome.get_gene_functional_associations_formatted(): Get functional associations for a gene in Harmonizome web interface format.
Harmonizome.get_gene_data()